Index

B

balance() (kpal.klib.Profile method)

binary_to_dna() (kpal.klib.Profile method)

C

copy() (kpal.klib.Profile method)

cosine_similarity() (in module kpal.metrics)

D

distance() (kpal.kdistlib.ProfileDistance method) distance_matrix() (in module kpal.kdistlib) distribution() (in module kpal.metrics)

dna_to_binary() (kpal.klib.Profile method) dynamic_smooth() (kpal.kdistlib.ProfileDistance method)

E

euclidean() (in module kpal.metrics)

F

from_fasta() (kpal.klib.Profile class method) from_fasta_by_record() (kpal.klib.Profile class method) from_file() (kpal.klib.Profile class method)

from_file_old_format() (kpal.klib.Profile class method) from_sequences() (kpal.klib.Profile class method)

G

get_scale() (in module kpal.metrics)

K

kpal.kdistlib (module) kpal.klib (module)

kpal.metrics (module)

M

mean (kpal.klib.Profile attribute) median (kpal.klib.Profile attribute) merge() (kpal.klib.Profile method)

mergers (in module kpal.metrics) multiset() (in module kpal.metrics)

N

name (kpal.klib.Profile attribute) non_zero (kpal.klib.Profile attribute)

number (kpal.klib.Profile attribute)

P

pairwise (in module kpal.metrics) positive() (in module kpal.metrics) print_counts() (kpal.klib.Profile method)

Profile (class in kpal.klib) ProfileDistance (class in kpal.kdistlib)

R

reverse_complement() (kpal.klib.Profile method)

S

save() (kpal.klib.Profile method) scale_down() (in module kpal.metrics) shrink() (kpal.klib.Profile method) shuffle() (kpal.klib.Profile method)

split() (kpal.klib.Profile method) std (kpal.klib.Profile attribute) summary (in module kpal.metrics)

T

total (kpal.klib.Profile attribute)

V

vector_distance (in module kpal.metrics)

vector_length() (in module kpal.metrics)